Now - onto some questionable issues in the study.
First - the baseline. Data was collected in from May to July 2006. They determined a baseline (normal deathrate) by asking back to Jan 2002. They then determined how many deaths occured in the period of Jan 2002 to Mar 2003 (14 months) and determined that to be the expected rate of death.
In total the recorded 610 deaths over the total time period of Jan 2002 to July 2006. Roughly 1/2 of these are used to compute the 600,000+ violent deaths in excess of expected deaths (or due to the war).
In all, the survey team recorded 70 deaths from 1849 households for the pre-invasion baseline. This baseline is critical since the comparison is made relative to this (eg. excess deaths). Further, the study concludes that ALL violent deaths occuring in the sample period are attributable to the war since very few were considered violent in the baseline. Are we to believe that NO violent deaths occured prior to the invasion? This study says yes since only 2 of the 70 were considered violent and one of those is attributed to pre-war coalition activities. Here is the first clue that you have an extrapolation problem. To extend these findings at the rate of the study (as the authors do) of 5.5/1000 - you reach a number of 143,000 annual deaths in Iraq - none of which are considered to be violent (non-accidental or natural cause). Do you believe that everyone that died in Iraq in 2002 died of either an accident or natural causes? That is the assumption the researchers used in their projection. Who'd have thought there were no murders in Iraq prior to the war.
Further a few household difference in sampling could yield a signficantly different number here -- especially because the incidence rate is so low.
Next issue. Cause of violent deaths. While the authors claim violent death due to coalition actions have diminished (as a percentage of total violent deaths), the numbers show that 1/2 of the violent deaths due to airstrikes occurred in the last year (20 out of 40 in the sample). So Shock and Awe, Fallujah, etc. did less damage to civilians than airstrikes in the last year? Doubtful. However, when you project off of small numbers 40 total airstrike deaths in the sample (of 289 total violent deaths) you can get some weird numbers.
It appears we do have a potential sampling problem here. Polling data of 1200 registered voters can be accurate (if chosen correctly) since all share the common characteristic of being a voter. If you get a few too many dems or reps, you will slightly skew the results but you still have many others in the sample to make up for it. When you have incidence rates as low as in this study (one average only about 2% of the households in the study had an airstrike death over the 4 year period) getting the wrong household can have a major impact. For example, if one families house was hit by an airstrike, several members might have been lost - the chance for RSE (random sampling error) is high. More likely, much less than 1% of households had such a death due to the likelihood of multiple deaths.