Pakistan, Jordan, Lebanon, Yemen, the UAE, Kuwait, Iraq, Turkey, Morocco.
While these are certainly Muslim countries they are not theocracies. It would be as if stating that since America is a Christian nation, with laws based on Judeo-Christian tenets, it is a theocracy.
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I am not sure about Lebanon and Morocco but am pretty sure that everyone of the other countries either has a blasphemy law that prohibits things like conversion to another religion or else allows private groups to enforce them with impugnity.
All with the exception of those two officially recognize Islam as the "true religion" to the exclusion of others and grants different rights to muslims and non-muslims.
The other two may as well. I just don't know.