To help in organizing schedules and travel for the farflung league, the members were divided into four quadrants of four teams each, as follows:
Quadrant 1 Quadrant 2 Quadrant 3 Quadrant 4
Hawaiʻi UNLV BYU Tulsa
Fresno State Air Force Utah TCU
San Diego State Colorado State New Mexico SMU
San Jose State Wyoming UTEP Rice
Quadrant one was always part of the Pacific Division, and quadrant four was always part of the Mountain Division. Quadrant two was part of the Pacific Division for 1996 and 1997 before switching to the Mountain Division in 1998, while the reverse was true for quadrant three. The scheduled fourth year of the alignment was abandoned after eight schools left to form the Mountain West Conference.
The division champions in football met from 1996 to 1998 in a championship game at Sam Boyd Stadium (also known as the Silver Bowl) in Henderson, Nevada.
Increasingly, this arrangement was not satisfactory to most of the older, pre-1990 members. Five members in particular (Air Force, BYU, Colorado State, Utah, and Wyoming) felt that WAC expansion had compromised the athletic and academic excellence of the membership. Additional concerns centered around finances, as the new league stretched from Hawaiʻi to Oklahoma and travel costs became a concern. In 1999, those five schools, along with old line WAC schools New Mexico and San Diego State, as well as newcomer UNLV, split off and formed the new Mountain West Conference.