Just because it goes back a long time doesn't mean a foreign power wasn't involved. The Arab Spring, supported by the Muslim Brotherhood, was full speed by 2010. You can usually tell if we support or oppose a coups by how quickly we recognize the new government.
Egypt - Morsi (Muslim Brotherhood) was elected in June 2012, by the end of June the US was seeking to "expand" relations with the Muslim Brotherhood.
https://www.washingtonpost.com/world/national-security/us-to-expand-relations-with-muslim-brotherhood/2011/06/30/AGVgppsH_story.html. Morsi was so bad the Egyptian Army had to take over so he couldn't establish an Islamic government.
Libya - Qaddafi was deposed in 2011 by the Muslim Brotherhood. That probably doesn't happen without NATOs help. Shortly after there were reports we were running weapons from Libya to Syria culminating in the Benghazi attack.
Clinton's own emails state Qatar and Saudi (our allies) are funding ISIS. She should know, her right hand seems to have ties to the Muslim Brotherhood.
We're talking about 3 of the secular, quasi democracies with relatively high standards of living in the Muslim world. Why would we not oppose them being overthrown by an organization that wants to install an Islamist government?